If you run 
wallet_list_accounts
Does it say that your account is registered?
There is a key for each account in the KEY column, you can use this key to send
funds to the account. Try to use the following command either to send funds to cover fees or try to move the funds out. Do it with small amount first 
wallet_transfer_to_address 
Here is the 'help wallet_transer_to_address' output
Do a simple (non-TITAN) transfer to an address
Parameters:
  amount_to_transfer (real_amount, required): the amount of shares to transfer
  asset_symbol (asset_symbol, required): the asset to transfer
  from_account_name (account_name, required): the source account to draw the shares from
  to_address (string, required): the address or pubkey to transfer to
  memo_message (string, optional, defaults to ""): a memo to store with the transaction
  strategy (vote_strategy, optional, defaults to "vote_recommended"): enumeration [vote_none | vote_all | vote_random | vote_recommended] 
Returns:
  transaction_record
In the receiving account you should see the balance change. But there is no record in the 'transaction history'. The transaction record is visible in history only for the sending account.
Make sure your wallet and the account are synched:
in the 
get_info
output you should see
"blockchain_head_block_age": "<anything under 10 seconds>",
...
"wallet_open": true,
"wallet_unlocked": true,
...
"wallet_scan_progress": "100.00 %",