There are known bugs with wallet_account_transaction_history.. Is your balances correct? If yes you could just ignore the history by now.
By the way here is where the 0.0001 BTC went:
(wallet closed) >>> blockchain_get_transaction 7c6f9e64d6609f26b4eb4353d4e56458fbf2a168
[
  "7c6f9e64d6609f26b4eb4353d4e56458fbf2a168",{
    "trx": {
      "expiration": "2015-02-15T12:45:53",
      "reserved": null,
      "operations": [{
          "type": "deposit_op_type",
          "data": {
            "amount": 10000,
            "condition": {
              "asset_id": 4,
              "slate_id": 0,
              "type": "withdraw_signature_type",
              "data": {
                "owner": "BTS3qb4gPgkT7QDMxhoPLnHFs6wQeS3wKgwu",
                "memo": {
                  "one_time_key": "BTS5v7iybMfyH3KXPF41vPjyVixVHEJSAZJEwyoD9ieZ4u1kUGnPA",
                  "encrypted_memo_data": "93847b9d575a58b2d71c0d4d263a6e869f7d18b4819c81c0fad71881fcd902446c6c33175fe848e408d0f907a120ecab86f881bf5622c75054b57ad50392b4fc3adcda537051def8d914bb061f8a2089eb26c836cfae9b4ed4cb862908a6ab6c"
                }
              }
            }
          }
        }
...
(wallet closed) >>> blockchain_list_address_balances "BTS3qb4gPgkT7QDMxhoPLnHFs6wQeS3wKgwu"
[[
    "BTS6LwqtsYUHXjHDFXjBejdr8aJfdEnRQ4HH",{
      "condition": {
        "asset_id": 4,
        "slate_id": 0,
        "type": "withdraw_signature_type",
        "data": {
          "owner": "BTS3qb4gPgkT7QDMxhoPLnHFs6wQeS3wKgwu",
          "memo": {
            "one_time_key": "BTS5v7iybMfyH3KXPF41vPjyVixVHEJSAZJEwyoD9ieZ4u1kUGnPA",
            "encrypted_memo_data": "93847b9d575a58b2d71c0d4d263a6e869f7d18b4819c81c0fad71881fcd902446c6c33175fe848e408d0f907a120ecab86f881bf5622c75054b57ad50392b4fc3adcda537051def8d914bb061f8a2089eb26c836cfae9b4ed4cb862908a6ab6c"
          }
        }
      },
      "balance": 10000,
      "restricted_owner": null,
      "snapshot_info": null,
      "deposit_date": "2015-02-15T11:38:30",
      "last_update": "2015-02-15T11:38:30",
      "meta_data": null
    }
  ]
]
Try:
wallet_dump_private_key BTS3qb4gPgkT7QDMxhoPLnHFs6wQeS3wKgwu
wallet_dump_private_key BTS6LwqtsYUHXjHDFXjBejdr8aJfdEnRQ4HH
It's fine if you see a key.